CCP Approach to the Protein Folding Problem

  1. Protein Folding Simulation in CCP..
    Poster at ICLP2004 .
  2. L. Bortolussi, A. Dal Palu', A. Dovier Constraint-based tools for protein folding.
    DEMO at CILC'04.
  3. L. Bortolussi, A. Dal Palu', A. Dovier, and F. Fogolari.
    Protein Folding Simulation in CCP..
    In Workshop Agenti e Vincoli: Modelli e Tecnologie per Dominare la Complessità AI*IA 2004 Perugia , 17 Settembre 2004.
  4. A. Dal Palù, A. Dovier, F. Fogolari.
    Protein Folding Simulation in CCP. (DRAFT).
    In Proc. of ICLP 2004, LNCS 3132 pp. 452-453, Saint Malo, France.
  5. L. Bortolussi, A. Dal Palu', A. Dovier.
    Protein Folding Simulation in Concurrent Constraint Programming..
    In BioConcur 2004 Workshop on Concurrent Models in Molecular Biology London, 30 August 2004.
    • Mozart Code of the above paper. (updated May 28th, 2004).
  6. L. Bortolussi, A. Dal Palu', A. Dovier, F. Fogolari.
    Agent-based Protein Folding Simulation .
    In Intelligenza Artificiale January 2005.
    • Linda + C code Code of the above paper.
  7. L. Bortolussi, A. Dovier, and F. Fogolari.
    Multi-Agent Simulation of Protein Folding.
    In Proc. of First International Workshop on Multi-Agent Systems for Medicine, Computational Biology, and Bioinformatics (25 July 2005 - Uthrect, The Netherlands), in conjunction with AAMAS'05.
  8. F. Fogolari, L. Pieri, A. Dovier, L. Bortolussi, G. Giugliarelli, A. Corazza, G. Esposito, P. Viglino.
    Scoring predictive models using a reduced representation of proteins: model and energy definition.
    BMC Structural Biology 7:15, March 23th, 2007.
  9. Luca Bortolussi Agostino Dovier Federico Fogolari.
    Agent-based Protein Structure Prediction (draft)
    Multiagent and Grid Systems, IOS Press, Vol 3, No. 2, 2007.
  10. A. Dal Palu', A. Dovier, F. Fogolari, and E. Pontelli.
    Constraint based protein fragment assembly.
    In BIO-LOGICAL 2009 Satellite workshop of the AI*IA 2009. Reggio Emilia, Dec. 12, 2009.
  11. A. Dal Palu', A. Dovier, F. Fogolari, and E. Pontelli.
    CLP-based protein fragment assembly. (Draft)
    Theory and Practice of Logic Programming, special issue dedicated to ICLP 2010. 10(4-6): pp 709-724, July 2010. Material and Code for 10 and 11

Back to the PFP home page